Sample — ENA Global Microbial Identifier reporting standard checklist GMI_MDM:1.1

Level: Sample   Package: ENA Global Microbial Identifier reporting standard checklist GMI_MDM:1.1

This package contains 45 terms.

Term	Requirement
amount or size of sample collected	optional
bio_material	optional
clinical setting	optional
collected by	mandatory
country of travel	optional
culture_collection	optional
environmental_sample	mandatory
genotype	optional
geographic location (altitude)	optional
geographic location (depth)	optional
geographic location (latitude)	mandatory
geographic location (longitude)	mandatory
geographic location (region and locality)	optional
geographic location (region and locality)	optional
host age	optional
host description	optional
host disease outcome	optional
host disease stage	optional
host disease status	optional
host health state	mandatory
host life stage	optional
host scientific name	mandatory
host sex	optional
host subject id	optional
host taxid	optional
identified_by	optional
Is the sequenced pathogen host associated?	mandatory
isolate	mandatory
isolation source host-associated	recommended
isolation source non-host-associated	recommended
lab_host	optional
mating_type	optional
passage_history	optional
pathotype	optional
sample storage conditions	optional
serovar	recommended
specimen_voucher	optional
strain	recommended
sub_group	optional
sub_species	optional
sub_strain	optional
sub_type	optional
subject exposure	optional
subject exposure duration	optional
travel-relation	optional