assembly quality

Assembly quality is one of 3 attributes which in combination reflect the standard quality of a MAG, see here for more information: https://ena-docs.readthedocs.io/en/latest/faq_metagenomes.html. Assembly statistics include, but are not limited to total assembly size, number of contigs, contig N50/L50, and maximum contig length.

MIxS term

This term is part of the Minimum Information about any Sequence (MIxS) standard.

Identifier: https://w3id.org/mixs/0000056

Syntax	Example
`(Many fragments with little to no review of assembly other than reporting of standard assembly statistics	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

Used in packages

Level	Package	Requirement
Sample	GSC MIMAGS	mandatory
Sample	GSC MISAGS	mandatory
Sample	GSC MIUVIGS	mandatory
Sample	ENA binned metagenome	recommended