taxonomic classification
Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes. Expected values are: classification method, database name, and other parameters e.g. vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, default parameters)
Identifier: fairds:taxonomic_classification
| Example |
|---|
vConTACT2 (NCBI RefSeq v83, genus rank, default parameters) |
Used in packages
Section titled “Used in packages”| Level | Package | Requirement |
|---|---|---|
| Sample | GSC MIMAGS | optional |
| Sample | GSC MISAGS | optional |
| Sample | GSC MIUVIGS | optional |
| Sample | ENA binned metagenome | optional |