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FAIR by Design Ontology
16S recovered
16S recovery software
absolute air humidity
acid flow rate
acid type
acid weight
adapters
adductor weight
aeration rate
age
agitation rate
air temperature
air temperature regimen
alkalinity
alkyl diethers
aminopeptidase activity
ammonium
amniotic fluid/color
amniotic fluid/foetal health status
amniotic fluid/gestation state
amniotic fluid/maternal health status
amount of inoculum
amount or size of sample collected
ancestral data
Animal Removal Date
Animal removal from the study
annotation source
antibiotic regimen
antifoam type
antifoam weight
antiviral treatment
antiviral treatment dosage
antiviral treatment duration
antiviral treatment initiation
aquaculture origin
area of sampling site
assay date
assay description
assay identifier
assay name
assay type
assembly quality
assembly software
Associated publication
atmospheric data
bacdive ID
bacterial carbon production
bacterial production
bacterial respiration
barcoding center
Barn
barometric pressure
base flow rate
base type
base weight
binning parameters
binning software
bio_material
biochemical oxygen demand
Biological material altitude
Biological material coordinates uncertainty
Biological material external ID
Biological material ID
Biological material latitude
Biological material longitude
Biological material preprocessing
biological status
biomass
biosafety level
biotic regimen
biotic relationship
birth control
Birth Weight
bishomohopanol
block
blood/blood disorder
Blood sample site
Blood Tube
Body Weight
broad-scale environmental context
bromide
building occupancy type
building setting
calcium
carbon dioxide
carbon monoxide
carbon/nitrogen ratio
cell_line
cell_type
cellular component
chemical administration
chemical compound
chemical mutagen
chemical oxygen demand
chimera check
chloride
chlorophyll
Chlorophyll Sensor
Citation
climate environment
clinical setting
collected by
collecting institution
collection date
collector name
completeness approach
completeness score
completeness software
composite design/sieving (if any)
compound name
concentration
concentration method
conductivity
Contact institution
contamination score
contamination screening input
contamination screening parameters
control scheme
country of travel
Creepfed
cultivar
cultivation type
Cultural practices
culture_collection
culture collection ID
culture_or_strain_id
culture rooting medium
current land use
current vegetation
current vegetation method
Cytokine
Data File Path
date of birth
date of death
Day of disease
Days of Treatment
decontamination software
definition for seropositive sample
Demultiplexed forward file
Demultiplexed reverse file
density
Department
Depth
derived from
dermatology disorder
Description of growth facility
Description of the experimental design
designations
detection type
dev_stage
dew point
diagnosis
diagnostic method
diether lipids
dilution rate
disease staging
dissolved carbon dioxide
dissolved hydrogen
dissolved inorganic carbon
dissolved inorganic nitrogen
dissolved inorganic phosphorus
dissolved organic carbon
dissolved organic nitrogen
dissolved oxygen
DNA concentration
dominant hand
dose
douche
downward PAR
drainage classification
drug usage
ecotype
efficiency percent
Email address
emulsions
encoded traits
end date
End date of study
engrafted tumor collection site
engrafted tumor sample passage
engraftment host strain name
Enrichment
environmental history
environmental medium
environmental_sample
environmental stress
estimated size
ethnicity
Event Date/Time
Event Date/Time End
Event Date/Time Start
Event Label
experimental factor
experimental factor 1
experimental factor 2
experimental factor 3
experimental factor 4
experimental factor 5
Experimental Group
Experimental site name
extrachromosomal elements
extreme_unusual_properties/Al saturation
extreme_unusual_properties/Al saturation method
extreme_unusual_properties/heavy metals
extreme_unusual_properties/heavy metals method
extreme_unusual_properties/salinity
extreme_unusual_properties/salinity method
Facility
feature prediction
Fecal Score (Barn)
Fecal Score (Lab)
fedbatch rate
fedbatch trigger
fedbatch type
feed flow rate
Feed Intake
feed type
feed weight
fertilizer regimen
File
filter type
finishing strategy
Firstname
Flowcell
fluorescence
Forward barcode sequence
Forward file
Forward primer
fungicide regimen
Further Details
GAL
GAL_sample_id
gas flow rate
gas input composition
gaseous environment
gaseous substances
gastrointestinal tract disorder
Gastrointestinal Tract Segment
genetic modification
genotype
Genus
geographic location (altitude)
Geographic location (country)
geographic location (country and/or sea)
geographic location (depth)
geographic location (elevation)
geographic location (latitude)
geographic location (longitude)
geographic location (region and locality)
germline
glucosidase activity
GMO
gonad weight
gravidity
gravity
growth condition
growth facility
growth habit
growth hormone regimen
growth media
gynecological disorder
habitat
harvest flow rate
harvest weight
harvesting conditions
health or disease status of specific host
Health Score
heating and cooling system type
Hematology Parameter
herbicide regimen
Histology
history/agrochemical additions
history/crop rotation
history/extreme events
history/fire
history/flooding
history/previous land use
history/previous land use method
history/tillage
horizon
horizon method
hospitalisation
host age
host behaviour
host blood pressure diastolic
host blood pressure systolic
host body habitat
host body product
host body site
host body temperature
host body-mass index
host breed
host color
host common name
host description
host diet
host diet treatment
host diet treatment concentration
host disease outcome
host disease stage
host disease status
host dry mass
host family relationship
host genotype
host growth conditions
host gutted mass
host habitat
host health state
host height
host HIV status
host infra-specific name
host infra-specific rank
host last meal
host length
host life stage
host occupation
host phenotype
host prediction approach
host prediction estimated accuracy
host pulse
host scientific name
host sex
host shape
host storage container
host storage container pH
host storage container temperature
host subject id
host substrate
host taxid
host total mass
host wet mass
HRT
humidity
humidity regimen
hysterectomy
identified_by
identifier_affiliation
IHMC medication code
illness duration
illness onset date
illness symptoms
Immunoglobulin Type
immunoprecipitate
individual
indoor space
indoor surface
induction rate
induction trigger
induction trigger duration
induction type
industrial effluent percent
infect
influenza strain unique number
influenza test method
influenza test result
influenza vaccination date
influenza vaccination type
influenza virus type
influenza-like illness at the time of sample collection
Infraspecific name
initial time point
initial working volume
inoculation dose
inoculation route
inoculation source
inoculation stock availability
inoculum composition
inoculum duration
inoculum type
inorganic particles
input localisation
Insert size
instrument for DNA concentration measurement
Instrument model
internal id
Investigation description
Investigation identifier
Investigation title
investigation type
Is the sequenced pathogen host associated?
isolate
isolation and growth condition
isolation source
isolation source host-associated
isolation source non-host-associated
known pathogenicity
lab_host
Last Update Date
Lastname
lat_lon
Latitude End
Latitude Start
library construction method
Library forward file
Library forward filename
Library name
library reads sequenced
Library reverse file
Library reverse filename
library screening strategy
library selection
library size
library source
library strategy
library vector
License
lifestage
light intensity
light regimen
light type
lineage:swl (required for H1N1 viruses)
link to classification information
link to climate information
links to additional analysis
LitterID
liver disorder
local environmental context
local ID
Longitude End
Longitude Start
lung/nose-throat disorder
lung/pulmonary disorder
MAG coverage software
magnesium
major diet change in last six months
Map of experimental design
Marine Region
Material source accession name
Material source accession number
Material source altitude
Material source coordinates uncertainty
Material source description
Material source DOI
Material source ID (Holding institute/stock centre, accession)
Material source institute code
Material source institute name
Material source latitude
Material source longitude
Material source other identifiers
mating_type
mean annual and seasonal precipitation
mean annual and seasonal temperature
mean friction velocity
mean peak friction velocity
meaning of cut off value
mechanical damage
medical history performed
menarche
menopause
Metabolite Type
metagenomic source
methane
Method
Method accession number
Method description
MIAPPE version
microbial biomass
microbial biomass method
mineral nutrient regimen
miscellaneous parameter
modifications
morphology
multiplex identifiers
n-alkanes
name of the sampling site
ncbi taxonomy id
nitrate
Nitrate Sensor
nitrite
nitrogen
non-mineral nutrient regimen
nose/mouth/teeth/throat disorder
notes
nucleic acid amplification
nucleic acid extraction
number of inoculated individuals
number of replicons
number of standard tRNAs extracted
Observation unit description
Observation unit external ID
Observation Unit factor value
Observation unit identifier
Observation unit level hierarchy
Observation unit name
Observation unit type
observed biotic relationship
occupancy at sampling
occupant density at sampling
ORCID
Organ type
Organ weight
organic carbon
organic matter
organic nitrogen
organic particles
Organism
#organism
organism common name
organism count
organism part
organism phenotype
organization
original collection date
original geographic location
original geographic location (latitude)
original geographic location (longitude)
other pathogens test result
other pathogens tested
oxygen
oxygen dependence
Oxygen Sensor
oxygenation status of sample
package
Assay — Amplicon demultiplexed
Assay — Amplicon library
Assay — default
Assay — Genome
Assay — Illumina
Assay — LS454
Assay — Metabolomics
Assay — miappe
assay — MIFE
Assay — Nanopore
Assay — PacBio
Assay — Proteomics
Investigation — default
Investigation — miappe
investigation — MIFE
Investigation — unlock
ObservationUnit — default
ObservationUnit — miappe
ObservationUnit — MIFE
ObservationUnit — person
ObservationUnit — pig
Sample — 2 ENA Global Microbial Identifier Proficiency Test (GMI PT) checklist
Sample — air
Sample — built environment
Sample — COMPARE-ECDC-EFSA pilot food-associated reporting standard
Sample — COMPARE-ECDC-EFSA pilot human-associated reporting standard
Sample — Crop Plant sample enhanced annotation checklist
Sample — default
Sample — ENA binned metagenome
Sample — ENA default sample checklist
Sample — ENA Global Microbial Identifier reporting standard checklist GMI_MDM:1.1
Sample — ENA Influenza virus reporting standard checklist
Sample — ENA Marine Microalgae Checklist
Sample — ENA Micro B3
Sample — ENA mutagenesis by carcinogen treatment checklist
Sample — ENA parasite sample checklist
Sample — ENA prokaryotic pathogen minimal sample checklist
Sample — ENA sewage checklist
Sample — ENA Shellfish Checklist
Sample — ENA Tara Oceans
Sample — ENA virus pathogen reporting standard checklist
Sample — GSC MIMAGS
Sample — GSC MISAGS
Sample — GSC MIUVIGS
Sample — HoloFood Checklist
Sample — host associated
Sample — human associated
Sample — human gut
Sample — human oral
Sample — human skin
Sample — human vaginal
Sample — miappe
Sample — microbial mat biolfilm
sample — MIFE
Sample — miscellaneous natural or artificial environment
Sample — PDX Checklist
Sample — pig
Sample — pig_blood
Sample — pig_histology
Sample — plant associated
Sample — Plant Sample Checklist
Sample — sediment
Sample — soil
Sample — Tree of Life Checklist
Sample — UniEuk_EukBank
Sample — wastewater sludge
Sample — water
Study — default
Study — miappe
study — MIFE
particulate organic carbon
particulate organic nitrogen
passage_history
pathogenicity
pathotype
patient age at collection of tumor
patient sex
patient tumor diagnosis at time of collection
patient tumor primary site
patient tumor site of collection
patient tumor type
pCO2
pcr conditions
pcr primers
PenID
personal protective equipment
perturbation
pesticide regimen
petroleum hydrocarbon
pH
pH method
pH regimen
phaeopigments
phase
phase duration
phase end time
phase purpose
phase start time
phenotype
phosphate
phospholipid fatty acid
photon flux
PigID
place of birth
plant body site
plant developmental stage
plant growth medium
plant product
plant sex
plant structure
plant treatment
Platform
ploidy
pO2
pollutants
pooling of DNA extracts (if done)
population size of the catchment area
potassium
pre-treatment
preculture description
preculture medium
predicted genome structure
predicted genome type
pRedox
pregnancy
presence of pets or farm animals
pressure
primary production
primary treatment
Primer names
profile position
project name
propagation
protocol
Protocol Label
protocol url
proxy voucher
Public release date
purification method
radiation regimen
rainfall regimen
reactor type
read quality filter
reassembly post binning
receipt date
recipe url
redox potential
reference
Reference associated to the method
reference database(s)
reference for biomaterial
reference host genome for decontamination
references
relationship
relationship to oxygen
relative air humidity
relative pressure
relevant electronic resources
relevant standard operating procedures
replicate
replicate id
replicate type
resistance
resistance MIC
respirable particulate matter
Reverse barcode sequence
Reverse file
Reverse primer
rooting conditions
rooting medium carbon
rooting medium macronutrients
rooting medium micronutrients
rooting medium organic supplements
rooting medium pH
rooting medium regulators
rooting medium solidifier
Salinity
Salinity Sensor
salt regimen
same as
sample capture status
Sample Collection Device
sample collection device or method
sample collection method
sample coordinator
sample coordinator affiliation
sample derived from
sample description
sample disease stage
sample disease status
sample dry mass
sample health state
sample height
sample identifier
sample length
sample material
sample material processing
sample name
sample origin
sample phenotype
sample preparation
sample salinity
sample same as
sample size sorting method
Sample Status
sample storage buffer
sample storage conditions
sample storage container
sample storage duration
sample storage location
sample storage temperature
sample symbiont of
sample taxon name
sample transportation date
sample transportation temperature
sample transportation time
sample treatment
Sample Type
sample unique ID
sample volume or weight for DNA extraction
sample weight for DNA extraction
sample wet mass
sampled age
Sampling Campaign
Sampling Platform
Sampling Site
Sampling Station
sampling strategy
sampling time point
Scale
Scale accession number
scientific name
seabed habitat
seasonal environment
secondary treatment
sequence accession number
sequence quality check
Sequencing Kit
sequencing method
serotype
serotype (required for a seropositive sample)
serovar
serovar_in-silico
sewage type
sex
sexual activity
sharepoint link
shell length
shell markings
shell width
shellfish soft tissue weight
shellfish total weight
silicate
similarity search method
single cell or viral particle lysis approach
single cell or viral particle lysis kit protocol
Site for Histology
Size Fraction Lower Threshold
size fraction selected
Size Fraction Upper Threshold
size of the catchment area
Slaughter Day
Slaughter Weight
slope aspect
slope gradient
sludge retention time
smoker
sodium
soil pH
soil_taxonomic/FAO classification
soil_taxonomic/local classification
soil_taxonomic/local classification method
soil type
soil type method
soil water content
solar irradiance
soluble inorganic material
soluble organic material
soluble reactive phosphorus
sorting technology
source
source material description
source material identifiers
source of UViGs
source of vaccination information
SowID
space typical state
Spatial distribution
special diet
Species
#species
specific host
specimen_id
specimen_voucher
sporulation
standing water regimen
start date
Start date of study
storage conditions
strain
study completion status
Study description
Study identifier
Study title
sub_group
sub_species
sub_strain
sub_type
subject exposure
subject exposure duration
Submission Date
subspecific genetic lineage
subspecific genetic lineage name
subspecific genetic lineage rank
substrate flow rate
substructure type
sulfate
sulfide
surface air contaminant
surface humidity
surface material
surface moisture
surface moisture pH
surface temperature
surveillance target
suspended particulate matter
suspended solids
symbiont
target gene
target metabolite
Target subfragment
taxonomic classification
taxonomic identity marker
taxonomy id
technology type
temperature
temperature of inoculum
tertiary treatment
texture
texture method
tidal stage
Tight Junctions
time
Time scale
time since last toothbrushing
time since last wash
tissue culture growth media
tissue_lib
tissue_type
tolid
total carbon
total depth of water column
total dissolved nitrogen
total inorganic nitrogen
total nitrogen
total nitrogen method
total organic C method
total organic carbon
total particulate carbon
total phosphate
total phosphorus
toxin burden
Trait
Trait accession number
Trait Characteristic
Trait Characteristic Accession number
Trait Entity
Trait Entity Accession number
travel outside the country in last six months
travel-relation
treatment agent
treatment date
treatment dose
Treatment Type
trial length
trial timepoint
tRNA extraction software
trophic level
tumor grading (OBI_0600002)
turbidity
twin sibling presence
type exposure
Type of Enrichment
Type of experimental design
Type of growth facility
typical occupant density
urine/collection method
urine/kidney disorder
urine/urogenital tract disorder
urogenital disorder
vaccine dosage
vaccine lot number
vaccine manufacturer
Variable accession number
variety
ventilation rate
ventilation type
vessel id
viral identification software
virus enrichment approach
virus identifier
volatile organic compounds
volume
vOTU classification approach
vOTU database
vOTU sequence comparison approach
Was the PDX model humanised?
wastewater type
water content
water content method
water current
water flow rate
water temperature regimen
watering regimen
Weaning Date
Weaning Weight
weight
weight loss in last three months
WGA amplification approach
WGA amplification kit
WHO/OIE/FAO clade (required for HPAI H5N1 viruses)
wind direction
wind speed
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Sample — GSC MISAGS
Level:
Sample
Package:
GSC MISAGS
This package contains 57 terms.
Term
Requirement
16S recovered
optional
16S recovery software
optional
adapters
optional
amount or size of sample collected
optional
annotation source
optional
assembly quality
mandatory
assembly software
mandatory
broad-scale environmental context
mandatory
completeness approach
optional
completeness score
mandatory
completeness software
mandatory
contamination score
mandatory
contamination screening input
optional
contamination screening parameters
optional
decontamination software
optional
environmental medium
mandatory
experimental factor
optional
feature prediction
optional
geographic location (altitude)
optional
geographic location (depth)
optional
geographic location (elevation)
optional
geographic location (latitude)
mandatory
geographic location (longitude)
mandatory
geographic location (region and locality)
optional
investigation type
ignore
isolation source
mandatory
library reads sequenced
optional
library screening strategy
optional
library size
optional
library vector
optional
local environmental context
mandatory
metagenomic source
mandatory
multiplex identifiers
optional
nucleic acid amplification
optional
nucleic acid extraction
optional
number of standard tRNAs extracted
optional
project name
ignore
reference database(s)
optional
reference for biomaterial
optional
relationship to oxygen
optional
relevant electronic resources
optional
relevant standard operating procedures
optional
sample collection device or method
optional
sample derived from
mandatory
sample material processing
optional
sequencing method
ignore
similarity search method
optional
single cell or viral particle lysis approach
mandatory
single cell or viral particle lysis kit protocol
optional
size fraction selected
optional
sorting technology
mandatory
source material identifiers
optional
taxonomic classification
optional
taxonomic identity marker
mandatory
tRNA extraction software
optional
WGA amplification approach
mandatory
WGA amplification kit
optional
