Sample — GSC MIUVIGS

Level: Sample   Package: GSC MIUVIGS

This package contains 69 terms.

Term	Requirement
adapters	optional
amount or size of sample collected	optional
annotation source	optional
assembly quality	mandatory
assembly software	mandatory
binning parameters	optional
binning software	optional
broad-scale environmental context	mandatory
completeness approach	optional
completeness score	optional
completeness software	optional
detection type	mandatory
environmental medium	mandatory
estimated size	optional
experimental factor	optional
feature prediction	optional
geographic location (altitude)	optional
geographic location (depth)	optional
geographic location (elevation)	optional
geographic location (latitude)	mandatory
geographic location (longitude)	mandatory
geographic location (region and locality)	optional
host prediction approach	optional
host prediction estimated accuracy	optional
investigation type	ignore
isolation source	mandatory
known pathogenicity	optional
library reads sequenced	optional
library screening strategy	optional
library size	optional
library vector	optional
local environmental context	mandatory
MAG coverage software	optional
metagenomic source	mandatory
multiplex identifiers	optional
nucleic acid amplification	optional
nucleic acid extraction	optional
number of standard tRNAs extracted	optional
observed biotic relationship	optional
predicted genome structure	mandatory
predicted genome type	mandatory
project name	ignore
reassembly post binning	optional
reference database(s)	optional
reference for biomaterial	optional
relevant electronic resources	optional
relevant standard operating procedures	optional
sample collection device or method	optional
sample derived from	mandatory
sample material processing	optional
sequencing method	ignore
similarity search method	optional
single cell or viral particle lysis approach	optional
single cell or viral particle lysis kit protocol	optional
size fraction selected	optional
sorting technology	optional
source material identifiers	optional
source of UViGs	mandatory
specific host	optional
taxonomic classification	optional
taxonomic identity marker	optional
tRNA extraction software	optional
viral identification software	mandatory
virus enrichment approach	mandatory
vOTU classification approach	optional
vOTU database	optional
vOTU sequence comparison approach	optional
WGA amplification approach	optional
WGA amplification kit	optional