Sample — GSC MIMAGS

Level: Sample   Package: GSC MIMAGS

This package contains 56 terms.

Term	Requirement
16S recovered	optional
16S recovery software	optional
adapters	optional
amount or size of sample collected	optional
annotation source	optional
assembly quality	mandatory
assembly software	mandatory
binning parameters	mandatory
binning software	mandatory
broad-scale environmental context	mandatory
completeness approach	optional
completeness score	mandatory
completeness software	mandatory
contamination score	mandatory
contamination screening input	optional
contamination screening parameters	optional
decontamination software	optional
environmental medium	mandatory
experimental factor	optional
feature prediction	optional
geographic location (altitude)	optional
geographic location (depth)	optional
geographic location (elevation)	optional
geographic location (latitude)	mandatory
geographic location (longitude)	mandatory
geographic location (region and locality)	optional
investigation type	ignore
isolation source	mandatory
library reads sequenced	optional
library screening strategy	optional
library size	optional
library vector	optional
local environmental context	mandatory
MAG coverage software	optional
metagenomic source	mandatory
multiplex identifiers	optional
nucleic acid amplification	optional
nucleic acid extraction	optional
number of standard tRNAs extracted	optional
project name	ignore
reassembly post binning	optional
reference database(s)	optional
reference for biomaterial	optional
relationship to oxygen	optional
relevant electronic resources	optional
relevant standard operating procedures	optional
sample collection device or method	optional
sample derived from	mandatory
sample material processing	optional
sequencing method	ignore
similarity search method	optional
size fraction selected	optional
source material identifiers	optional
taxonomic classification	optional
taxonomic identity marker	mandatory
tRNA extraction software	optional