Sample — human gut

Level: Sample   Package: human gut

This package contains 79 terms.

Term	Requirement
adapters	optional
amount or size of sample collected	optional
annotation source	optional
broad-scale environmental context	mandatory
chemical administration	optional
chimera check	optional
encoded traits	optional
environmental medium	mandatory
estimated size	optional
ethnicity	optional
experimental factor	optional
extrachromosomal elements	optional
finishing strategy	optional
gastrointestinal tract disorder	optional
geographic location (latitude)	mandatory
geographic location (longitude)	mandatory
geographic location (region and locality)	optional
host age	optional
host body product	optional
host body site	optional
host body temperature	optional
host body-mass index	optional
host diet	optional
host disease status	optional
host family relationship	optional
host genotype	optional
host height	optional
host last meal	optional
host occupation	optional
host phenotype	optional
host pulse	optional
host sex	optional
host subject id	optional
host total mass	optional
IHMC medication code	optional
investigation type	ignore
isolation and growth condition	optional
known pathogenicity	optional
library construction method	optional
library reads sequenced	optional
library screening strategy	optional
library size	optional
library vector	optional
liver disorder	optional
local environmental context	mandatory
medical history performed	optional
miscellaneous parameter	optional
multiplex identifiers	optional
nucleic acid amplification	optional
nucleic acid extraction	optional
number of replicons	optional
observed biotic relationship	optional
organism count	optional
oxygenation status of sample	optional
pcr conditions	optional
pcr primers	optional
perturbation	optional
ploidy	optional
project name	ignore
propagation	optional
reference for biomaterial	optional
relationship to oxygen	optional
relevant electronic resources	optional
relevant standard operating procedures	optional
sample collection device or method	optional
sample material processing	optional
sample salinity	optional
sample storage duration	optional
sample storage location	optional
sample storage temperature	optional
sample volume or weight for DNA extraction	optional
sequence quality check	optional
sequencing method	ignore
source material identifiers	optional
special diet	optional
subspecific genetic lineage	optional
target gene	optional
temperature	optional
trophic level	optional